PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000252746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 371aa    MW: 41721.8 Da    PI: 8.3211
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000252746genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.38.9e-38872241127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                    lppG+rF Pt+eel+++yL++k++g++      l+++i+ v iy+++Pw+Lp+   +v++ + ++w+f ++r++++++g r++r t++gyWkatg+
  MDP0000252746  87 LPPGYRFYPTEEELISFYLHNKLDGRSgnlnRVLDRIIPVVYIYEFNPWELPQvsgEVSHgDLEQWFFXIPRQESETRGGRPRRLTTTGYWKATGS 182
                    79************************97774333457999************54563333244599999*************************** PP

            NAM  89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                       v+s+    ++++g k+t+ fy+grap+g+ t+W+m+ey+
  MDP0000252746 183 PSIVYSSnsnYNHAIGHKRTMGFYTGRAPHGKXTEWMMNEYK 224
                    *****985555556***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4083269IPR003441NAC domain
PROSITE profilePS5100543.65187269IPR003441NAC domain
PfamPF023655.9E-1988224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGENPNPTRP PPPPKSLPFR CTRRRCRVRS EASWRTRVFN PSMSSRPGSS TITPAPTSEL  60
STAVTSGSSV IRVRVEGAGE ADAMEDLPPG YRFYPTEEEL ISFYLHNKLD GRSGNLNRVL  120
DRIIPVVYIY EFNPWELPQV SGEVSHGDLE QWFFXIPRQE SETRGGRPRR LTTTGYWKAT  180
GSPSIVYSSN SNYNHAIGHK RTMGFYTGRA PHGKXTEWMM NEYKGIEVHA DHNNQLSMTA  240
SSSNTSTSTS TPSAPTLREE FSLCRVYKKS KCLRAFDRRP PGIEITRNPT LIIQAAPAQG  300
ANHLDQGSTT SNRNPQNMGD RTNLSSLDSS SSGDHGSQSS QPERSWTLPM AVDNEAIWEW  360
DELMDNWLHW F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D4e-29772698168NAC domain-containing protein 19
3swp_C4e-29772698168NAC domain-containing protein 19
3swp_B4e-29772698168NAC domain-containing protein 19
3swp_A4e-29772698168NAC domain-containing protein 19
3swm_D4e-29772698168NAC domain-containing protein 19
3swm_C4e-29772698168NAC domain-containing protein 19
3swm_B4e-29772698168NAC domain-containing protein 19
3swm_A4e-29772698168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391863.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLM5VSR51e-124M5VSR5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s22580.16e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-51NAC domain containing protein 90